Place par-baked pizza crust on a baking pan. Set aside.
In a medium non-stick skillet, cook bacon over medium-high heat until crisp. Remove from pan to a paper towel.
Drain all but 1 teaspoon of bacon fat from the pan. Add onions and green peppers. Saute over medium heat until soft (4-5 min). Remove veggies from pan into a small bowl.
In another small bowl, beat together eggs, milk, parsley, thyme, salt, and pepper. Pour egg mixture into skillet and heat over medium-low heat, stirring constantly to scramble the eggs. When the eggs hold together, but are still slightly moist, pour the scrambled eggs over the crust. Spread eggs to the edges of the crust with a spatula.
Cover eggs with ½ c of the cheese.
Spoon the onion mixture over top of the cheese, and crumble the bacon over the onions.
Top with remaining cheese.
Bake 7-10 minutes, until cheese is golden and eggs are no longer moist.